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Build the interactive Module 1 TFBS Explorer

Source: R/utils_step1_visualizations.R
build_module1_tfbs_explorer.Rd

Builds an explicitly requested standalone HTML explorer. Standard `predict_tfbs()` runs embed the same controls in the Module 1 QC report. Exact co-binding queries run in a browser worker, and motif rankings show the true top 20 plus canonical TF references at their actual rank.

Usage

build_module1_tfbs_explorer(
  module1,
  multiomic_data = NULL,
  output_file = NULL,
  default_condition = NULL,
  project_config = NULL,
  rebuild_cache = FALSE,
  verbose = TRUE
)

Arguments

module1

A `predict_tfbs()` result, Module 1 output directory, predicted TFBS table, table path, or manifest path.

multiomic_data

Optional CraftGRN multiomic object.

output_file

HTML output path.

default_condition

Initial condition. If `NULL`, use project configuration, control metadata, then A-Z order.

project_config

Optional YAML path or configuration list.

rebuild_cache

Rebuild the compact analysis cache even when valid.

verbose

Emit concise progress messages.

Value

Normalized path to the HTML report.