Skip to content

Build an interactive TF UMAP report from predicted TFBS

Source: R/utils_step1_visualizations.R
build_tfbs_umap_report.Rd

Build an interactive TF UMAP report from predicted TFBS

Usage

build_tfbs_umap_report(
  module1,
  output_file,
  top_variable_tfbs = 2000L,
  cluster_range = 2:12,
  default_clusters = 5L,
  seed = 1L,
  verbose = TRUE
)

Arguments

module1

A Module 1 result, output directory, predicted TFBS table, table path, or manifest path.

output_file

HTML output path.

top_variable_tfbs

Maximum number of variable footprint features.

cluster_range

Integer cluster counts offered in the HTML selector.

default_clusters

Initial cluster count.

seed

Random seed for UMAP and k-means.

verbose

Emit concise progress messages.

Value

Normalized path to the HTML report.