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Load a CraftGRN YAML config into an environment

Source: R/utils_config.R
load_config.Rd

Reads a YAML file and assigns each top-level key as a variable in the target environment (e.g., `db`, `threshold_tf_expr`, etc.). Also runs standard config initialization helpers when available.

Usage

load_config(path, env = .craftgrn_state)

Arguments

path

Character path to a YAML file.

env

Environment to populate. Defaults to the internal CraftGRN config state.

Value

(Invisibly) the parsed list.

Examples

# \donttest{
config_path <- tempfile(fileext = ".yaml")
writeLines(c(
  "db: JASPAR2024",
  "ref_genome: hg38",
  "threshold_expr: 1",
  "threshold_fp_score: 0",
  "threshold_fp_tf_corr_r: 0.3",
  "threshold_rna_gene_corr_r: 0.3",
  "threshold_fp_gene_corr_r: 0.3"
), config_path)
load_config(config_path)
# Config values are now available to CraftGRN helper functions.
# }