Correlate TFs to their canonical TFBS — module1_correlate_TF_to_canonical_tfbs • craftgrn

Correlate TFs to their canonical TFBS

Usage

module1_correlate_TF_to_canonical_tfbs(
  module1_inputs,
  r_cutoff = 0.3,
  p_cutoff = NULL,
  fdr_cutoff = NULL,
  min_non_na = 3L,
  cores = NULL,
  verbose = TRUE
)

Arguments

module1_inputs: Output from module1_prepare_tfbs_inputs.
r_cutoff: Minimum positive best correlation.
p_cutoff: Optional best-method p-value cutoff.
fdr_cutoff: Optional best-method FDR cutoff.
min_non_na: Minimum finite condition pairs required.
cores: Number of worker cores; NULL uses all available cores.
verbose: Emit concise progress messages.

Value

A tibble with Pearson, Spearman, best-method statistics, and pass flags.