Filter footprints with canonical binding for full TFBS prediction — module1_filter_canonical_bound_tfbs • craftgrn

Filter footprints with canonical binding for full TFBS prediction

Usage

module1_filter_canonical_bound_tfbs(
  module1_inputs,
  motif_supported_correlations,
  r_cutoff = 0.3,
  p_cutoff = NULL,
  fdr_cutoff = NULL,
  filter_to_canonical_bound = TRUE,
  verbose = TRUE
)

Arguments

module1_inputs: Output from module1_prepare_tfbs_inputs.
motif_supported_correlations: Output from module1_correlate_TF_to_canonical_tfbs.
r_cutoff: Minimum positive best correlation.
p_cutoff: Optional p-value cutoff.
fdr_cutoff: Optional FDR cutoff.
filter_to_canonical_bound: Keep only footprints with a passing motif-supported TF.
verbose: Emit concise progress messages.

Value

A list with canonical-bound and prediction footprint tables.