Extract Module 3 regulatory topics — module3_extract_topics • craftgrn

Public step function for extracting regulatory topics, pathway summaries, topic-link tables, and review outputs from trained Module 3 topic models.

Usage

module3_extract_topics(
  k,
  model_dir,
  output_dir,
  flatten_single_output = TRUE,
  ...
)

Arguments

k: Integer K selected for extraction.
model_dir: Directory containing trained topic model outputs.
output_dir: Directory to write extracted topic outputs.
flatten_single_output: Whether to write a single selected model directly under `output_dir`. Defaults to `TRUE` for the public step API.
...: Additional arguments passed to the internal extraction engine, such as `backend`, `doc_mode`, `weight_label`, and `topic_report_args`.

Value

Invisibly returns TRUE when extraction completes.