Plot a TF-TF co-binding heatmap — plot_tf_tf_cobinding_heatmap • craftgrn

Plot a TF-TF co-binding heatmap

Usage

plot_tf_tf_cobinding_heatmap(
  module1,
  metric = c("absolute", "jsd"),
  max_tfs = 100L,
  verbose = TRUE
)

Arguments

module1: A Module 1 result, output directory, predicted TFBS table, table path, or manifest path.
metric: Heatmap metric: absolute shared-site counts or Jensen-Shannon distance (`jsd`).
max_tfs: Maximum number of TFs, ranked by predicted TFBS count.
verbose: Emit concise progress messages.

Value

A ggplot heatmap with `cobinding_matrix` and `tf_order` attributes.