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Query specific links by TF(s) and/or distance to TSS

Source: R/utils_step2_predict_tf_targets.R
query_predicted_links.Rd

Query specific links by TF(s) and/or distance to TSS

Usage

query_predicted_links(
  module2,
  tf = NULL,
  fp_id = NULL,
  target_gene = NULL,
  max_distance_to_tss = NULL,
  pass_only = TRUE
)

Arguments

module2

Module 2 result list or loaded output list.

tf

Optional TF filter.

fp_id

Optional FP filter.

target_gene

Optional target-gene filter.

max_distance_to_tss

Optional maximum absolute distance to TSS.

pass_only

Keep only passing links.

Value

A tibble of matching final links.