Validate config values

Ensures required config keys (e.g. thresholds and db) exist in the chosen environment before running pipelines.

Usage

validate_config(
  required = c("db", "ref_genome", "threshold_expr", "threshold_fp_score",
    "threshold_fp_tf_corr_r", "link_window_bp", "threshold_rna_gene_corr_r",
    "threshold_fp_gene_corr_r"),
  numeric_required = c("threshold_expr", "threshold_fp_score", "threshold_fp_tf_corr_r",
    "link_window_bp", "threshold_rna_gene_corr_r", "threshold_fp_gene_corr_r"),
  env = .craftgrn_state
)

Arguments

required

Character vector of required variable names.

numeric_required

Character vector of required numeric variable names.

env

Environment to check. Defaults to the internal CraftGRN config state.

Value

TRUE invisibly when validation passes.