summarize-motifs

Summarize MEME, STREME, DREME, and Tomtom results in a compact report.

Example command

summarize-motifs --meme-txt project/de_novo/sample/streme/streme.txt \
  --tomtom-tsv project/de_novo/sample/tomtom/tomtom.tsv --out-tsv project/de_novo/sample/motif_summary.tsv

Primary inputs

• --meme-txt — MEME-compatible discovery output.
• --tomtom-tsv — optional Tomtom known-motif matches.
• --out-tsv — compact output table for discovered motifs and matches.

Main outputs

• the exact --out-tsv path — tab-separated discovered motif IDs, consensus sequences, significance values, and known-database matches when available.
• the exact --out-html path — optional portable HTML table containing the same summary and motif logos when available.

The command does not rename the requested output prefix; in the example the primary file is project/de_novo/sample/motif_summary.tsv.

See the de novo motif discovery workflow and the complete summarize-motifs reference.