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Single-cell ATAC-seq output example¶

The PBMC5k example shows per-cell footprint signatures across B cells, monocytes, and T/NK cells.

Signature heatmap¶

Per-cell PBMC5k footprint-signature heatmap grouped into B-cell, monocyte, and T/NK-cell blocks — Per-cell footprint-signature heatmap. Columns are cells grouped by broad cell type; rows are motif signatures.

Eight marker UMAPs¶

PBMC5k broad-cell-type UMAP and footprint-signature UMAPs for STAT6, FOSB, CEBPA, IRF8, RELA, ZNF683, NR4A1, and SMAD3 — Broad cell-type annotation and per-cell footprint-signature UMAPs for STAT6, FOSB, CEBPA, IRF8, RELA, ZNF683, NR4A1, and SMAD3.

Select either figure to open the full-resolution image. The Single-cell workflow describes the commands used to produce these outputs.